I’ve had some good pizza in my life.

Pepe’s pizza in New Haven, CT… The best deep-dish pizza in Chicago…
So, if one were to compare homemade 3 Cheese GAPS Diet pizza ‘apples to apples’ with those legends it might set you up for disappointment.

But. If you’re looking for that home variety of hot-melty-cheese-over-pizza-sauce-over-soft-with-a-little-crunch-pizza-crust, on a grain-free diet like GAPS™, you are in luck.

This pizza recipe is awesome for GAPS and tastes beautiful when it’s hot.

So, make some pizza and gather the kids around for game-night or a movie because…pizza is back on the menu, and it’s so easy to make!

For more recipes like this one, join the GAPS Dinner Club and get a weekly meal plan with recipes and grocery list delivered to your inbox!

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3 Cheese GAPS Diet Pizza

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  • Author: Melanie
  • Yield: Serves 6


3 Cheese GAPS Diet Pizza inspired by Mommypotamus.


  • 5 cups riced cauliflower (can be frozen)
  • 1/4 cup coconut flour
  • 1 cup Muenster cheese
  • 4 eggs
  • 1/2 teaspoon unrefined sea salt
  • 1 teaspoon onion powder
  • 1 can sugar-free pizza sauce
  • 3+ cups of muenster, Monterey jack & parmesan cheese, mixed


  1. Preheat oven to 450°
  2. Place two large baking sheets in the oven
  3. Measure out 5 cups of cauliflower “rice” and place it in a bowl.
  4. Sprinkle salt, onion powder, coconut flour and cheese over the cauliflower.
  5. Add eggs and stir until the ingredients are thoroughly mixed.
  6. Form mixture into two balls and press into the shape of two pizza crusts on parchment paper. The crust should be about 11-12 inches wide
  7. Slide heated baking sheets under the parchment paper and place crusts in the oven
  8. Bake for about 25 minutes. The crust should develop some golden-brown flecks when it’s ready for the addition of toppings
  9. Add toppings and bake for an additional 8-10 minutes. You can switch the oven setting from Bake to Broil for the last couple of minutes so that the cheese browns a little bit


I used frozen ready-made cauliflower “rice” from my local food store. You can also make your own cauliflower “rice” by pulsing cauliflower florets in your food processor.

4 thoughts on “3 Cheese GAPS Diet Pizza”

  1. Hi Melanie,
    Are there any pizza recipes (without the cheese) that would be suitable for Stage 4 or 5 of the intro diet?

    1. Hi Shauna, I have made a wonderful pizza for my son during intro by using Dr. Natasha’s basic bread recipe (in the yellow book, starting from Stage 4) for the crust and cultured cream or kefir curds (let your kefir go until separated into curds and whey, then strain with a nut milk bag) for the cheese topping. He loved it!

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